bin/radmonAgent.py
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 #!/usr/bin/python3 -u
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 # The -u option above turns off block buffering of python output. This 
 # assures that each error message gets individually printed to the log file.
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 #
 # Module: radmonAgent.py
 #
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 # Description: This module acts as an agent between the radiation monitoring
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 # device and Internet web services.  The agent periodically sends an http
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 # request to the radiation monitoring device and processes the response from
 # the device and performs a number of operations:
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 #     - conversion of data items
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 #     - update a round robin (rrdtool) database with the radiation data
 #     - periodically generate graphic charts for display in html documents
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 #     - write the processed radmon data to a JSON file for use by html
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 #       documents
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 #
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 # Copyright 2015 Jeff Owrey
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 #    This program is free software: you can redistribute it and/or modify
 #    it under the terms of the GNU General Public License as published by
 #    the Free Software Foundation, either version 3 of the License, or
 #    (at your option) any later version.
 #
 #    This program is distributed in the hope that it will be useful,
 #    but WITHOUT ANY WARRANTY; without even the implied warranty of
 #    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 #    GNU General Public License for more details.
 #
 #    You should have received a copy of the GNU General Public License
 #    along with this program.  If not, see http://www.gnu.org/license.
 #
 # Revision History
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 #   * v20 released 15 Sep 2015 by J L Owrey; first release
 #   * v21 released 27 Nov 2017 by J L Owrey; bug fixes; updates
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 #   * v22 released 03 Mar 2018 by J L Owrey; improved code readability;
 #         improved radmon device offline status handling
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 #   * v23 released 16 Nov 2018 by J L Owrey: improved fault handling
 #         and data conversion
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 #   * v24 released 14 Jun 2021 by J L Owrey; minor revisions
 #
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 #2345678901234567890123456789012345678901234567890123456789012345678901234567890
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 import os
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 import sys
 import signal
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 import subprocess
 import multiprocessing
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 import time
 import calendar
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 import json
 from urllib.request import urlopen
 
    ### ENVIRONMENT ###
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 _USER = os.environ['USER']
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 _SERVER_MODE = "primary"
 _USE_RADMON_TIMESTAMP = True
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    ### DEFAULT RADIATION MONITOR URL ###
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 _DEFAULT_RADIATION_MONITOR_URL = \
     "{your radiation monitor url}"
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     ### FILE AND FOLDER LOCATIONS ###
 
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 # folder for containing dynamic data objects
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 _DOCROOT_PATH = "/home/%s/public_html/radmon/" % _USER
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 # folder for charts and output data file
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 _CHARTS_DIRECTORY = _DOCROOT_PATH + "dynamic/"
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 # location of data output file
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 _OUTPUT_DATA_FILE = _DOCROOT_PATH + "dynamic/radmonData.js"
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 # database that stores radmon data
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 _RRD_FILE = "/home/%s/database/radmonData.rrd" % _USER
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     ### GLOBAL CONSTANTS ###
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 # max number of failed data requests allowed
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 _MAX_FAILED_DATA_REQUESTS = 3
 # interval in seconds between data requests
 _DEFAULT_DATA_REQUEST_INTERVAL = 2
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 # number seconds to wait for a response to HTTP request
 _HTTP_REQUEST_TIMEOUT = 3
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 # interval in seconds between database updates
 _DATABASE_UPDATE_INTERVAL = 30
 # interval in seconds between chart updates
 _CHART_UPDATE_INTERVAL = 300
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 # standard chart width in pixels
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 _CHART_WIDTH = 600
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 # standard chart height in pixels
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 _CHART_HEIGHT = 150
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    ### GLOBAL VARIABLES ###
 
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 # turn on or off of verbose debugging information
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 verboseMode = False
 debugMode = False
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 # The following two items are used for detecting system faults
 # and radiation monitor online or offline status.
 # count of failed attempts to get data from radiation monitor
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 failedUpdateCount = 0
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 # detected status of radiation monitor device
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 radmonOnline = True
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 # status of reset command to radiation monitor
 remoteDeviceReset = False
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 # ip address of radiation monitor
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 radiationMonitorUrl = _DEFAULT_RADIATION_MONITOR_URL
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 # web update frequency
 dataRequestInterval = _DEFAULT_DATA_REQUEST_INTERVAL
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   ###  PRIVATE METHODS  ###
 
 def getTimeStamp():
     """
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     Set the error message time stamp to the local system time.
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     Parameters: none
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     Returns: string containing the time stamp
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     """
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     return time.strftime( "%m/%d/%Y %T", time.localtime() )
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 ##end def
 
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 def setStatusToOffline():
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     """Set the detected status of the radiation monitor to
        "offline" and inform downstream clients by removing input
        and output data files.
        Parameters: none
        Returns: nothing
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     """
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     global radmonOnline
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     # Inform downstream clients by removing output data file.
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     if os.path.exists(_OUTPUT_DATA_FILE):
        os.remove(_OUTPUT_DATA_FILE)
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     # If the radiation monitor was previously online, then send
     # a message that we are now offline.
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     if radmonOnline:
         print('%s radiation monitor offline' % getTimeStamp())
     radmonOnline = False
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 ##end def
 
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 def terminateAgentProcess(signal, frame):
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     """Send a message to log when the agent process gets killed
        by the operating system.  Inform downstream clients
        by removing input and output data files.
        Parameters:
            signal, frame - dummy parameters
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        Returns: nothing
     """
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     # Inform downstream clients by removing output data file.
     if os.path.exists(_OUTPUT_DATA_FILE):
        os.remove(_OUTPUT_DATA_FILE)
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     print('%s terminating radmon agent process' % \
               (getTimeStamp()))
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     sys.exit(0)
 ##end def
 
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   ###  PUBLIC METHODS  ###
 
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 def getRadiationData(dData):
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     """Send http request to radiation monitoring device.  The
        response from the device contains the radiation data as
        unformatted ascii text.
        Parameters: none 
        Returns: a string containing the radiation data if successful,
                 or None if not successful
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     """
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     sUrl = radiationMonitorUrl
 
     if remoteDeviceReset:
         sUrl += "/reset" # reboot the radiation monitor
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     else:
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         sUrl += "/rdata" # request data from the monitor
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     try:
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         currentTime = time.time()
 
         response = urlopen(sUrl, timeout=_HTTP_REQUEST_TIMEOUT)
 
         if verboseMode:
             requestTime = time.time() - currentTime
             print("http request: %.4f seconds" % requestTime)
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         content = response.read().decode('utf-8')
         content = content.replace('\n', '')
         content = content.replace('\r', '')
         if content == "":
             raise Exception("empty response")
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     except Exception as exError:
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         # If no response is received from the device, then assume that
         # the device is down or unavailable over the network.  In
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         # that case return None to the calling function.
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         if verboseMode:
             print("%s getRadiationData: %s" % (getTimeStamp(), exError))
         return False
     ##end try
 
     if debugMode:
         print(content)
     
     dData['content'] = content
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     return True
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 ##end def
 
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 def parseDataString(dData):
     """Parse the data string returned by the radiation monitor
        into its component parts.
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        Parameters:
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             dData - a dictionary object to contain the parsed data items
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        Returns: True if successful, False otherwise
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     """
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     # Example radiation monitor data string
     # $,UTC=17:09:33 6/22/2021,CPS=0,CPM=26,uSv/hr=0.14,Mode=SLOW,#
     
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     try:
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         sData = dData.pop('content')
         lData = sData[2:-2].split(',')
     except Exception as exError:
         print("%s parseDataString: %s" % (getTimeStamp(), exError))
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         return False
 
     # Load the parsed data into a dictionary for easy access.
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     for item in lData:
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         if "=" in item:
             dData[item.split('=')[0]] = item.split('=')[1]
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     # Add status to dictionary object
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     dData['status'] = 'online'
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     # Verfy the expected number of data items have been received.
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     if len(dData) != 6:
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         print("%s parse failed: corrupted data string" % getTimeStamp())
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         return False;
 
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     return True
 ##end def
 
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 def convertData(dData):
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     """Convert individual radiation data items as necessary.
        Parameters:
            dData - a dictionary object containing the radiation data
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        Returns: True if successful, False otherwise
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     """
     try:
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         if _USE_RADMON_TIMESTAMP:
             # Convert the UTC timestamp provided by the radiation monitoring
             # device to epoch local time in seconds.
             ts_utc = time.strptime(dData['UTC'], "%H:%M:%S %m/%d/%Y")
             epoch_local_sec = calendar.timegm(ts_utc)
             dData['ELT'] = epoch_local_sec
         else:
             # Use a timestamp generated by the requesting server (this)
             # instead of the timestamp provided by the radiation monitoring
             # device.  Using the server generated timestamp prevents errors
             # that occur when the radiation monitoring device fails to
             # synchronize with a valid NTP time server.
             dData['ELT'] = time.time()
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         dData['date'] = \
             time.strftime("%m/%d/%Y %T", time.localtime(dData['ELT']))      
         dData['mode'] = dData.pop('Mode').lower()
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         dData['uSvPerHr'] = '%.2f' % float(dData.pop('uSv/hr'))
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     except Exception as exError:
         print("%s data conversion failed: %s" % (getTimeStamp(), exError))
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         return False
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     return True
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 ##end def
 
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 def writeOutputFile(dData):
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     """Write radiation data items to the output data file, formatted as 
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        a JSON file.  This file may then be accessed and used by
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        by downstream clients, for instance, in HTML documents.
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        Parameters:
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            dData - a dictionary object containing the data to be written
                    to the output data file
        Returns: True if successful, False otherwise
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     """
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     # Create temporary copy of output data dictionary
     # and remove unnecessary items.
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     dTemp = dict(dData)
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     dTemp.pop('ELT')
     dTemp.pop('UTC')
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     # Format the radmon data as string using java script object notation.
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     jsData = json.loads("{}")
     try:
         for key in dTemp:
             jsData.update({key:dTemp[key]})
         jsData.update({"serverMode":"%s" % _SERVER_MODE })
         sData = "[%s]" % json.dumps(jsData)
     except Exception as exError:
         print("%s writeOutputFile: %s" % (getTimeStamp(), exError))
         return False
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     if debugMode:
         print(sData)
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     # Write the string to the output data file for use by html documents.
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     try:
         fc = open(_OUTPUT_DATA_FILE, "w")
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         fc.write(sData)
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         fc.close()
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     except Exception as exError:
         print("%s writeOutputFile: %s" % (getTimeStamp(), exError))
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         return False
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     return True
 ## end def
 
 def updateDatabase(dData):
     """
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     Update the rrdtool database by executing an rrdtool system command.
     Format the command using the data extracted from the radiation
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     monitor response.   
     Parameters: dData - dictionary object containing data items to be
                         written to the rr database file
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     Returns: True if successful, False otherwise
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     """
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     global remoteDeviceReset
 
     # The RR database stores whole units, so convert uSv to Sv.
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     SvPerHr = float(dData['uSvPerHr']) * 1.0E-06 
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     # Format the rrdtool update command.
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     strCmd = "rrdtool update %s %s:%s:%s" % \
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                        (_RRD_FILE, dData['ELT'], dData['CPM'], SvPerHr)
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     if debugMode:
         print("%s" % strCmd) # DEBUG
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     # Run the command as a subprocess.
     try:
         subprocess.check_output(strCmd, shell=True,  \
                              stderr=subprocess.STDOUT)
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     except subprocess.CalledProcessError as exError:
         print("%s: rrdtool update failed: %s" % \
                     (getTimeStamp(), exError.output))
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         if exError.output.find("illegal attempt to update using time") > -1:
             remoteDeviceReset = True
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             print("%s: rebooting radiation monitor" % (getTimeStamp()))
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         return False
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     if verboseMode and not debugMode:
         print("update database")
 
     return True
 ##end def
 
 def setRadmonStatus(updateSuccess):
     """Detect if radiation monitor is offline or not available on
        the network. After a set number of attempts to get data
        from the monitor set a flag that the radmon is offline.
        Parameters:
            updateSuccess - a boolean that is True if data request
                            successful, False otherwise
        Returns: nothing
     """
     global failedUpdateCount, radmonOnline
 
     if updateSuccess:
         failedUpdateCount = 0
         # Set status and send a message to the log if the radmon was
         # previously offline and is now online.
         if not radmonOnline:
             print('%s radiation monitor online' % getTimeStamp())
             radmonOnline = True
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     else:
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         # The last attempt failed, so update the failed attempts
         # count.
         failedUpdateCount += 1
 
     if failedUpdateCount >= _MAX_FAILED_DATA_REQUESTS:
         # Max number of failed data requests, so set
         # monitor status to offline.
         setStatusToOffline()
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 ##end def
 
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 def createGraph(fileName, dataItem, gLabel, gTitle, gStart,
                 lower, upper, addTrend, autoScale):
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     """Uses rrdtool to create a graph of specified radmon data item.
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        Parameters:
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            fileName - name of file containing the graph
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            dataItem - data item to be graphed
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            gLabel - string containing a graph label for the data item
            gTitle - string containing a title for the graph
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            gStart - beginning time of the graphed data
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            lower - lower bound for graph ordinate #NOT USED
            upper - upper bound for graph ordinate #NOT USED
            addTrend - 0, show only graph data
                       1, show only a trend line
                       2, show a trend line and the graph data
            autoScale - if True, then use vertical axis auto scaling
                (lower and upper parameters are ignored), otherwise use
                lower and upper parameters to set vertical axis scale
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        Returns: True if successful, False otherwise
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     """
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     gPath = _CHARTS_DIRECTORY + fileName + ".png"
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     trendWindow = { 'end-1day': 7200,
                     'end-4weeks': 172800,
                     'end-12months': 604800 }
  
     # Format the rrdtool graph command.
 
     # Set chart start time, height, and width.
     strCmd = "rrdtool graph %s -a PNG -s %s -e now -w %s -h %s " \
              % (gPath, gStart, _CHART_WIDTH, _CHART_HEIGHT)
    
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     # Set the range and scaling of the chart y-axis.
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     if lower < upper:
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         strCmd  +=  "-l %s -u %s -r " % (lower, upper)
     elif autoScale:
         strCmd += "-A "
     strCmd += "-Y "
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     # Set the chart ordinate label and chart title. 
     strCmd += "-v %s -t %s " % (gLabel, gTitle)
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     # Show the data, or a moving average trend line over
     # the data, or both.
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     strCmd += "DEF:dSeries=%s:%s:LAST " % (_RRD_FILE, dataItem)
     if addTrend == 0:
         strCmd += "LINE1:dSeries#0400ff "
     elif addTrend == 1:
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         strCmd += "CDEF:smoothed=dSeries,%s,TREND LINE2:smoothed#006600 " \
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                   % trendWindow[gStart]
     elif addTrend == 2:
         strCmd += "LINE1:dSeries#0400ff "
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         strCmd += "CDEF:smoothed=dSeries,%s,TREND LINE2:smoothed#006600 " \
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                   % trendWindow[gStart]
      
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     if debugMode:
         print("\n%s" % strCmd) # DEBUG
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     # Run the formatted rrdtool command as a subprocess.
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     try:
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         result = subprocess.check_output(strCmd, \
                      stderr=subprocess.STDOUT,   \
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                      shell=True)
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     except subprocess.CalledProcessError as exError:
         print("rrdtool graph failed: %s" % (exError.output))
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         return False
 
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     if verboseMode:
         print("rrdtool graph: %s" % result.decode('utf-8'), end='')
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     return True
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 ##end def
 
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 def generateGraphs():
     """Generate graphs for display in html documents.
        Parameters: none
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        Returns: nothing
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     """
     autoScale = False
 
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     # past 24 hours
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     createGraph('24hr_cpm', 'CPM', 'counts\ per\ minute', 
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                 'CPM\ -\ Last\ 24\ Hours', 'end-1day', 0, 0, 2, autoScale)
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     createGraph('24hr_svperhr', 'SvperHr', 'Sv\ per\ hour',
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                 'Sv/Hr\ -\ Last\ 24\ Hours', 'end-1day', 0, 0, 2, autoScale)
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     # past 4 weeks
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     createGraph('4wk_cpm', 'CPM', 'counts\ per\ minute',
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                 'CPM\ -\ Last\ 4\ Weeks', 'end-4weeks', 0, 0, 2, autoScale)
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     createGraph('4wk_svperhr', 'SvperHr', 'Sv\ per\ hour',
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                 'Sv/Hr\ -\ Last\ 4\ Weeks', 'end-4weeks', 0, 0, 2, autoScale)
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     # past year
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     createGraph('12m_cpm', 'CPM', 'counts\ per\ minute',
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                 'CPM\ -\ Past\ Year', 'end-12months', 0, 0, 2, autoScale)
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     createGraph('12m_svperhr', 'SvperHr', 'Sv\ per\ hour',
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                 'Sv/Hr\ -\ Past\ Year', 'end-12months', 0, 0, 2, autoScale)
 ##end def
 
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 def getCLarguments():
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     """Get command line arguments.  There are four possible arguments
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           -d turns on debug mode
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           -v turns on verbose mode
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           -t sets the radiation device query interval
           -u sets the url of the radiation monitoring device
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        Returns: nothing
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     """
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     global verboseMode, debugMode, dataRequestInterval, \
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            radiationMonitorUrl
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     index = 1
     while index < len(sys.argv):
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         if sys.argv[index] == '-v':
             verboseMode = True
         elif sys.argv[index] == '-d':
             verboseMode = True
             debugMode = True
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         elif sys.argv[index] == '-t':
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             dataRequestInterval = abs(int(sys.argv[index + 1]))
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             index += 1
         elif sys.argv[index] == '-u':
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             radiationMonitorUrl = sys.argv[index + 1]
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             if radiationMonitorUrl.find('http://') < 0:
                 radiationMonitorUrl = 'http://' + radiationMonitorUrl
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             index += 1
         else:
             cmd_name = sys.argv[0].split('/')
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             print("Usage: %s [-d] [-t seconds] [-u url}" % cmd_name[-1])
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             exit(-1)
         index += 1
 ##end def
 
 def main():
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     """Handles timing of events and acts as executive routine managing
        all other functions.
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        Parameters: none
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        Returns: nothing
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     """
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     signal.signal(signal.SIGTERM, terminateAgentProcess)
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     signal.signal(signal.SIGINT, terminateAgentProcess)
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     print('%s starting up radmon agent process' % \
                   (getTimeStamp()))
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     # last time output JSON file updated
     lastDataRequestTime = -1
     # last time charts generated
     lastChartUpdateTime = - 1
     # last time the rrdtool database updated
     lastDatabaseUpdateTime = -1
 
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     ## Get command line arguments.
     getCLarguments()
 
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     ## Exit with error if rrdtool database does not exist.
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     if not os.path.exists(_RRD_FILE):
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         print('rrdtool database does not exist\n' \
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               'use createRadmonRrd script to ' \
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               'create rrdtool database\n')
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         exit(1)
  
     ## main loop
     while True:
 
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         currentTime = time.time() # get current time in seconds
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         # Every data update interval request data from the radiation
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         # monitor and process the received data.
         if currentTime - lastDataRequestTime > dataRequestInterval:
             lastDataRequestTime = currentTime
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             dData = {}
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             # Get the data string from the device.
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             result = getRadiationData(dData)
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             # If successful parse the data.
             if result:
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                 result = parseDataString(dData)
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             # If parsing successful, convert the data.
             if result:
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                 result = convertData(dData)
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             # If conversion successful, write data to data files.
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             if result:
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                 writeOutputFile(dData)
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             # At the rrdtool database update interval, update the database.
             if result and (currentTime - lastDatabaseUpdateTime > \
                            _DATABASE_UPDATE_INTERVAL):   
                 lastDatabaseUpdateTime = currentTime
                 ## Update the round robin database with the parsed data.
                 result = updateDatabase(dData)
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             # Set the radmon status to online or offline depending on the
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             # success or failure of the above operations.
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             setRadmonStatus(result)
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         # At the chart generation interval, generate charts.
         if currentTime - lastChartUpdateTime > _CHART_UPDATE_INTERVAL:
             lastChartUpdateTime = currentTime
             p = multiprocessing.Process(target=generateGraphs, args=())
             p.start()
 
         # Relinquish processing back to the operating system until
         # the next update interval.
 
         elapsedTime = time.time() - currentTime
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         if verboseMode:
             if result:
                 print("update successful: %6f sec\n"
                       % elapsedTime)
             else:
                 print("update failed: %6f sec\n"
                       % elapsedTime)
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         remainingTime = dataRequestInterval - elapsedTime
         if remainingTime > 0.0:
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             time.sleep(remainingTime)
     ## end while
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     return
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 ## end def
 
 if __name__ == '__main__':
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     main()